Sentence examples for files were processed by from inspiring English sources
Resultant data files were processed by using Skyline38 version 3.6 (MacCoss Lab, University of Washington, Seattle, WA, USA) and peak quantification was refined with mProphet39 in Skyline.
The raw files were processed by MaxQuant software (version 1.5.3.8) with searches against the Uniprot human database and a variable modification of serine, threonine and tyrosine phosphorylation.
The aligned read files were processed by Cufflinks50, with RNA-seq fragment counts (that is, fragments per kilobase of exon per million fragments mapped (FPKM)) to measure the relative abundance of transcripts.
Raw image files were processed by Illumina pipeline for base-calling with default parameters and the sequences of each individual were generated as 100-bp paired-end reads.
The raw scanned image files were processed by using data normalization, quality assurance and control, filtering, and clustering.
Utilizing ArrayAssist (Stratagene, La Jolla, CA), raw Affymetrix CEL files were processed by applying the MAS5 algorithm, to assign detection calls (Present/Marginal/Absent) for each probe set that were subsequently used in downstream data filtering.
These files are processed by the GCM component factory to build an executable application that is executed within the GCM/ProActive execution environment.
An overview of the MADS+ pipeline is provided below: Preprocessing: raw junction array CEL files are processed by the ProbeEffects program (Kapur et al., 2007).
The array image data (.CEL files) was processed by the factor analysis for robust microarray summarization algorithm (FARMS) with quantile normalization [ 38].
Most of these earlier tactics have been aimed at one of several weak points in the audio playback process: the quality of the digital file itself, the way in which the file is processed by the device, or the quality of the speakers in the earphones.
Then, the resultant file was processed by the software package GetData converting the spectrum data into the digital format of a dat-file.
