Sentence examples for files were analyzed using from inspiring English sources

MS raw files were analyzed using Skyline52.

Raw data files were analyzed using MaxQuant (development version 1.5.2.8 85.

The PKL files were analyzed using the MASCOT search engine.

Image files were analyzed using Hermes Dynamic Study display software V4.0 (Hermes Gold V2.10, Hermes Medical Solutions, Stockholm/London).

Image files were analyzed using ImageJ software (NIH).

Data files were analyzed using FACSDiva™ software (BD).

The MGF files were analyzed using Proteome Discoverer 1.2 (Thermo Fisher Scientific).

All image files were analyzed using GCOS with the MAS 5 algorithm.

Microarray summarization files were analyzed using the Bioconductor in the R framework.

The Affymetrix raw data (.cel files) were analyzed using Bioconductor tools [29] in R (version 2.7.2, http://www.r-project.org/).org/

The cell intensity files were analyzed using GeneChip Analysis Software GTYPEE) v4.1 and Genotyping Console Software v2.1.