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BEAST MCC tree files of analyses [A]-[D] are available in the Dryad repository, doi 10.5061/dryad.8dh7r at http://datadryad.org[ 58].
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See the following Figures reporting output files of the analyses.
Input xml files of these analyses and resulting consensus trees are available from the Dryad Digital Repository: http://dx.doi.org/10.5061/dryad.bc578 [ 69].
The primary data (multiple sequence alignments and phylogenetic tree) and other additional files of data analyses have been deposited in Dryad Digital Repository (https://datadryad.org/resource/doi 10.5061/dryad.th547).org/resource/doi 10.5061/dryad.th547
This value is calculated by the software Tracer v1.4 [ 45] from the log files of the MCMC analyses, and should be significantly positive when rates are autocorrelated, and near zero when there is no evidence of autocorrelation (see BEAST manual).
Additional file 8 shows the results of analyses of significantly and suggestively trait-associated SNPs for all annotations.
Fixing the age of the Bufonidae, we explored every permutation of the internal calibrations resulting in 14 sets of analyses (Additional file 4).
Tiff files of micrographs were further analysed using Adobe Photoshop CS6.
(DOCX 19 kb) Additional file 2: Analyses of temporal clustering of neuroblastic tumours at ages <18 months, separately for males and females in the NRYPMDR.
(DOCX 16 kb) Additional file 3: Analyses of temporal clustering of neuroblastic tumours at ages 18 months to 24 years inclusive, separately for males and females in the NRYPMDR.
For copy number and LOH analyses, CEL files of the individual samples as deposited in GEO 54219 were used.
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