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The files generated by the ABI3130xl were then analyzed using GeneMapper v4.0 (Applied Biosystems).
Genome-wide sequencing depths were obtained with qualimap using BAM files generated by SpeedSeq.
The image files generated by the sequencer were then processed to produce digital data.
As a result, the mapped BLIF files generated for sequential circuits contain unmapped latches.
The files generated by a job can then be loaded into subsequent jobs as dependencies themselves.
The extension.rtp is suggested for files generated in rtpdump -F dump format.
These boundary files are created based on equivalency files generated by the Geographic Correspondence Engine (Geocorr).
These boundary files are created based on equivalency files generated by the Geographic Correspondence Engine (GeoCorr).
Raw Affymetrix CEL files (generated on the HG-U133 Plus 2.0 array) were processed with the R package gcrma.
The BAM files generated by BWA were sorted and provided as input to the GATK software package90 (Version 3.1-1).
All output files generated by PhyloH during this study are stored in the "Analysis" folder in the Supplementary Information files.
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