Spot intensity from.cel files was interpreted through an RMA pre-processor.
During.cel file loading and pre-normalisation,.cel files were interpreted using either, (1) the respective A. thaliana or rice.cdf files (i.e. with no probe-selection used), or (2) using.cdf files generated from the Musa gDNA.cel file with CDF values ranging from 0 to 1000.
We have learned that great attention must be paid to how data files work on different platforms, even accounting for details like how whitespace at the end of a file is interpreted.
AB1-files were interpreted using ESME, which normalizes sequence traces, corrects for incomplete bisulphite conversion and allows for quantification of methylation signals.
It is important to note that SNPs not found in a VCF file is interpreted as not being a variation and the corresponding base in the reference is expected.
The Additional file 1 includes a detailed description of how the figures are interpreted and the results.
The smears are interpreted according to a modification of the Bethesda system [ 19] (See Additional file 1).
Mass data collected during nanoLC- MS/MS analysis were processed, converted into *.mgf files and were interpreted using a local Mascot server (Matrix Science, London, UK).
After the key-word delimited top section of the file, use the keyword "runs" (or "files", with or without ":") to denote that subsequent lines in the file should be interpreted as runs.
After the key-word delimited top section of the file, use the keyword "runs" or "runs:" to denote that subsequent lines in the file should be interpreted as runs.
The key file allows the creator to specify details of how the data in the XML file should be interpreted, and what assumptions were made when preparing the data.
