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To confirm that post-burn-in trees represent the actual MCMC posterior distribution, marginal parameters (i.e., the MrBayes log file) were analyzed using the Effective Sample Size (ESS) statistic in the program Tracer [34].
Raw data (.fsa file) were analyzed with the GeneMapper Software V4.0 (Applied Biosystems).
Their rehabilitation service visits in 2005 through 2009 listed in the inpatient and outpatient claims file were analyzed retrospectively.
The workflow for data analysis and data validation is summarized in Figure 2. Sequencing data (.sff file) were analyzed with Roche 454 Reference Mapper program.
Tab-delimited text file were analyzed in R v.2.7.2 software environment http://www.r-project.org using the limma package v.2.14.16 of Bioconductor http://www.bioconductor.org.
The collision-induced dissociation (CID) spectra in this file were analyzed using X tandem (2012.10.01.1) against a database of annotated proteins (.fasta format), using the following search settings: fixed modification C + 57.021; parent mass error: + − 20 PPM; fragment mass error + −0.05 Da.
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As each file is analyzed, the clients send the calculations to a centralized server that compiles the results.
If any copies of that file are analyzed, they will also produce this same hash value.
The file was analyzed and prepared for printing with Mesh Lab, a 3D dedicated software package.
The output file was analyzed with the program MEGAN[23].
The resulting log file was analyzed in Tracer [24].
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