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A MASCOT generic file was generated from all exported MS/MS spectra from Progenesis software.
This file was generated from the 16A release of the Department of City Planning's LION file.
The first set of reference data (i.e., treatment A) corresponds to a batch of nA = 65 CEL files obtained from GEO, where each CEL file was generated from an array hybridization with source material isolated from mouse liver (Table S1).The second set of reference data (i.e., treatment B) corresponds to a batch of nB CEL files from the jth leukocyte population (Table S2).
Each genomic comparison file was generated from NCBI- Local BLAST program, which is available in BioEdit Sequence Alignment Editor [ 35].
A Variant Call Format (VCF) file was generated from each of the Illumina short read data sets listed in Table 1.
In parallel, the second MPILEUP file was generated from two separate BAM files containing reads data for the low and high bulks.
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8 : * Middle-level version of the Diderot IL. 10 : * Note: this file is generated from gen/mid-il.spec and gen/mid-il.in.in
Mascot generic format (mgfs) files were generated from MS and MS/MS raw data.
For display, SGR files were generated from BAM files and viewed in the Integrated Genome Browser.
These files were generated from the most recent CALDB available at the start of the current proposal cycle.
Custom VCF files were generated from the Complete Genomics files for reference and variant calls for the 67 genomic coordinates of interest (Table 1).
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CEO of Professional Science Editing for Scientists @ prosciediting.com