If the text or sound file query is already in the database, then the query node will be connected through the node representing it in the network by a single link of weight zero (meaning equivalence).
The following relevant data from tBLASTx output were extracted to an Excel file: query sequence name, query sequence length, fungi database target name, fungi database e-value for top match, total query sequence length for all match to fungi database, plant database target name, plant database top match e-value, total query sequence length for all match to plant database.
Additional file 2: Queries in ECLECTIC.
Barcodes from 118 sphingid species collected in Area de Conservacion Guanacaste, northwestern Costa Rica, were used as query barcodes (see additional file 2: Query dataset).
The hierarchical query to select all children of node 4 is a simple numerical calculation, see Additional file 1 (Query 1) for an example SQL query using the nested set left_id and right_id.
Materialised paths are stored in the N ODE table in the column path as shown in Figure 1, (see Additional file 1, Query 2, for an example SQL query using materialised paths).
The prescription file was queried for the presence of filled statin (atorvastatin, cerivastatin, fluvastatin, pravastatin, simvastatin, lovastatin) prescriptions.
The interface offered by the private cloud allows users for submitting files and queries to be securely stored and computed, respectively.
After both SDF file and query file were imported into the tool, it called the functions in OpenBabel to match SMARTS with structures in SDF file.
If the exact position for a TEI has been determined by clipped read signature, the original bam file is queried for all reads that overlap this position.
