A total of 374 CEL files of samples from platform GPL1320 were used to construct the network and involved three treatment types (biotic stress, development, abiotic stress) and 13 series.
After loading the measurement file, list of samples and treatment steps will be displayed in the "Sample" and "Treatment" panels located on the right side of the software interface.
Processed data are provided as.TIFF files of sample locations, and.TXT files of sampled data in an x- y coordinate format, and a normalised distance format.
Additional file 2. Excel file with list of samples, read statistics and overlap between the datasets.
After reviewing the BAM file of this sample in IGV, a variant was observed at the nearby site A11654G.
To obtain reliable results, a raw GC/MS data file of QC sample was imported to the AMDIS software http://chemdata.nist.gov/mass-spc/amdis/ for automatically searching against an author-constructed standard library including retention time and mass spectra.
Additional file 8: Summary of samples used in each method.
Additional file 1: Placement of samples in runs.
Additional file 2: List of samples generated and their sequencing depth.
