Sentence examples for file for parsing from inspiring English sources

The main script opens an input file for parsing, an output file to receive lists of concepts extracted from the input file, and creates a hash data structure (also known as dictionary) of all the UMLS code/term pairs contained in an external database file, named goodhit.

Preprocessing a map file and storing chromosome-separated wig files allows DROMPA to reduce the computation time for parsing a map file and to require memory for only one chromosome, which reduces the consumed memory for peak calling.

It uses the Java Evolutionary Biology Library v2.0 (available at http://code.google.com/p/jebl2/) for parsing files in Nexus format.

More importantly, it establishes a framework for parsing sequence files using the functions 'bs-reader' and 'biosequence-seq'.

The algorithm for protein morphing was implemented in ANSI C. We used BioRuby [ 25] – an open source bioinformatics library for Ruby – for parsing PDB files, and the QCProt 1.3 realization of the QCP algorithm for aligning proteins in 3D, distributed under a BSD open source license.

The library's core functionality is a set of tools for parsing the OBO file format (http://www.geneontology.org/GO.format.shtml).shtml

jCompoundMapper includes a buffered random access reader for parsing the input files.

This paper presents a novel parsing architecture, designed for parsing Postfix log files, that aims to make the process of parsing new inputs as simple as possible, enabling users to trivially add new rules (to parse variants of existing inputs) and relatively easily add new actions (to process a previously unknown category of input).

The PHP function for parsing GDS SOFT files was adopted from the EzArray software (Zhu et al., 2008).

Each query sequence was compared to the reference database using blastp with default BLOSUM62 scoring matrix and print option 9. Run times include parallel execution startup, time for parsing the input files, creating and distributing their binary counterparts, performing all calculations and terminating the job.

The protein structure API contains tools for parsing and manipulating PDB files (Berman et al., 2000).