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An input dataset should consist of compound data in the form of a Structure-Data File (SDF), and data associated with their combinations (including calculated synergy metrics) in the form of a comma separated values (CSV) file (examples provided with the repository).
MaCS and AlphaDrop are each controlled by a single specification file, examples of which are given in the supporting information, File S1.
a See table 1 The IDML schema version 1.0 (idml.xsd file), examples of IDML-document andocumentationon on the syntax are available at our web site.
Elements of the BioC XML are detailed in Table 1, and we have included several key file examples in the Supplementary Material to illustrate more variations of the BioC data.
However, SPREAD is not necessarily limited to this input, as it employs a general, trait-annotated NEXUS format; we provide several tree file examples for both discrete or continuous annotations (Compiled, runnable package and supplementary data are hosted at: http://www.phylogeography.org/SPREAD.html).org/SPREAD.html
Below are a few basic C file examples.
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UDECON installation file, example SRM measurement, format, and response files are available at http://earthref.org/ERDA/2202/.
The output file example.json (Additional file 1) contains the cluster heatmap in the InCHlib input format.
rm –I example1.txt will delete the file example1.txt after prompting you to confirm.
If you need to remove anything from the computer you are connected to, you can use the rm command: rm example1.txt will delete the file example1.txt.
Data may be given in one or two separate files; examples for data import are provided and the usage is described in the web tool.
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