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11671_2011_655_MOESM1_ESM.DOC Additional file 1: Designation code, porosity, and mean thickness.
13021_2014_10_MOESM1_ESM.pdf Additional file 1: Land designation observed within the study area.
The isolates were primarily Salmonella, Escherichia and Shigella (which are combined here), Klebsiella and Proteus (Table 1), and fell into variably diverse subgroups e.g. subspecies, serotypes beyond those designations (see Additional file 1: Table S2; Additional file 2: Figure S1; Additional file 3: Figure S2; Additional file 4: Figure S3 and Additional file 5: Figure S4).
Genomes are ordered on both axes according to their cluster and subcluster designations (Supplementary file 1 ) determined by nucleotide sequence similarities.
Because of the large number of taxa and relatively low support values for informative characters, we used NJ analysis to support our subgroup designations (Additional file 5: Figure S4).
The clustergram grouping individual woodrats by overall expression profile (all 6286 genes) grouped all the N. lepida in one monophyletic clade and each N. bryanti population in its own monophyletic clade, but did not group individuals by diet within species designations (Additional file 2: Figure S1).
The original GO designations are available in File S3, File S4, and File S5.
Sequence IDs consist of ITS2 type, strain designation or source of isolation (in brackets), MnSOD isoform and NCBI accession number or contig/assembly designation (Additional file 11 ).
Sequence IDs consist of ITS2 type, strain designation or source of isolation (in brackets), APX isoform and NCBI accession number or contig/assembly designation (Additional file 11 ).
In 28 cases, this revealed evidence against the leaderless mRNA designation (Additional file 4: Table S4).
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