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The highest correlation coefficient was observed between the controlled and semi-controlled platform with r = 0.56, followed by correlations between the controlled and field platform with r = 0.54, and the semi-controlled and field platform with r = 0.18.
In the field platform, genotypic variation for FT was significant (P < 0.05) in four (LIP1, LIP2, SAS1, and SAS2) of the six environments (P < 0.05).
It is worth to point out that the correlation between the controlled and semi-controlled platform was higher than between the semi-controlled and field platform.
The largest positive β SNP among the 170 SNPs in the field platform was observed for SNP7 in ScIce2 (β SNP = 4.30).
In the field platform, 29 statistically significant (P < 0.05) SNPs were identified among six genes: ScCbf9b, ScCbf12, ScCbf15, ScDhn1, ScDreb2, and ScIce2.
When correlations were restricted to the significant SNPs, slightly higher correlation coefficients were observed with r = 0.64 between the controlled and semi-controlled platform, r = 0.66 between the controlled and field platform, and r = 0.34 between the semi-controlled and field platform.
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The climate data of the semi-controlled and field platforms are provided in Additional file 1.
In order to keep the same sign as with the measurements in the controlled and field platforms, % leaf damage was replaced by % plants with undamaged leaves, calculated as 100% - % leaf damage.
The favorable allele of SNP7 in ScIce2 had a relatively large allelic effect on FT in the controlled and field platforms when compared to other SNPs in this study.
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