Sentence examples for fetch sequences from inspiring English sources
In addition, both databases were indexed to fetch sequences faster for intermediate steps during analysis.
Various proxy implementations are provided which can store sequences in memory, fetch sequences on demand from a web service such as UniProt or read sequences from a FASTA file as needed.
Dalliance uses the standard distributed annotation system (DAS) protocol (Jenkinson et al., 2008), already used to add extra tracks to the web-based browsers including Ensembl and Gbrowse, to fetch sequence, annotations and alignments from servers around the network, before integrating the data into a smoothly-scrolling vector graphics display (Fig. 1).
Fetched sequences were then compared to sHSP sequences labeled within UniProt with at least one of the following annotations: family:"small heat shock protein, family:"HSP20", "prosite PS01031" and "pfam PF0011".
A 10 bp sliding window over the 500 bp flanking sequence was chosen to calculate the GC content for each window, and then the average GC content was calculated at the same position of all the fetched sequences.
Users can fetch a sequence or sequences in a position defined by the users.
A user can download a FASTA-formatted full genomic scaffold sequence by following the Fetch a Scaffold link in the left sidebar of the MGP Portal home page, entering a scaffold identifier (e.g., ML0001) in the search box, and selecting the Fetch sequence option.
The sequences, provided by the user, are used as seeds to fetch similar sequences in the NCBI web site.
For the second step, the selected query sequences (2632 queries) were subjected to BLASTP analysis against 'refseq-protein' to fetch homologous sequences with E-values less than 0.001, up to 500 hits at a maximum.
We used this feature to fetch sHSP sequences through the UniProt databank.
For the second step, these genes were subjected to BLASTP analysis against 'refseq-protein' to fetch homologous sequences with E-values less than 0.001, up to 500 hits at a maximum.
