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Names of algorithms are colored according to whether they consider only sequence or thermodynamic features of site pairing (grey), only site conservation (orange), pairing and contextual features of a site (red), or pairing, contextual features, and site conservation (purple).
Additional features of site context help explain why a given site (e.g., a 7mer-m8 site to miR-1) can be more effective in one 3′ UTR than it is in another.
Rules for target recognition, for instance the seven-nucleotide (7-nt) miRNA seed sequence, defined as positions 2 8 at the 5' end of the miRNA, combined with features of site context, were applied to predict and discover human miRNA targets [ 31, 32].
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We furthermore investigated the sequence features of sites of H3K9me2 nucleation.
That the effects were found despite this variation in features of sites was encouraging.
Further site-specific features analysis revealed that the features of sites surrounding the central lysine contributed more to the determination of pupylation sites than the other sites.
Further this change should not alter the coordination chemistry as it retains the essential chemical feature of site 4, a hydroxyl that can contribute to the coordination shell of the permeant ion [31] (Figure 2C).
This disorder feature of site 10 had an index of 72.
There were 2 solvent accessibility features in the top 10 features: the solvent accessibility feature of site 11 had an index of 3, and the solvent accessibility feature of site 21 had an index of 4. In the optimal feature set, there was only 1 disorder feature.
Our goal was to build a Ste20p substrate predictor that considers sequence features of phosphorylation site and distal sites.
Structural features of the site L1 differ from those of sites M and L3.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com