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Therefore, answering online selective graph queries with a combination of light-weight indices and fast graph exploration makes it a feasible solution with respect to both time and space efficiency.
NSPDK is a fast graph kernel based on exact matching between pairs of small subgraphs.
A fast graph matching approach is used subsequently to extend each ITS to a global atom mapping.
The Neo4j Kernel is a fast graph engine with the main characteristics expected by a DBMS, like recovery, management of transactions and indexing structures.
Our solution relies on a novel inter-fragment distance measure, a graph model for inter-fragment dissimilarity assessment and a fast graph partitioning algorithm.
More specifically, we extend a fast graph kernel technique that we have recently developed (Costa and Grave, 2010) for chemoinformatics applications and we adapt it to detect similarities between RNA secondary structures.
Similar(54)
The MRF smoother estimates pixel level posterior class distributions by weighted bilinear interpolation from the four nearest patch-level posteriors, builds a pixel level MRF with these data terms and simple Potts model couplings with parameter 0.7, and runs fast graph-cut optimization on the MRF to obtain the final pixel level labelings.
We then encode the sequence of several of these attributes in compact discrete structures, which we then process using fast graph-kernel techniques.
We propose a novel way to encode expression profiles in compact discrete structures, which can then be processed using fast graph-kernel techniques.
This graph is then processed by a fast graph-kernel technique called NSPDK, recently introduced by Costa and Grave (2010), which extracts as explicit features, the occurrence counts of all the possible pairs of near small neighborhood subgraphs.
As the computation of the encoding for each neighbor subgraph can be cached, the practical complexity for the overall encoding of a graph is linear in its vertex set size with small hidden multiplicative coefficient, making it one of the fastest graph kernels available (Costa and Grave, 2010).
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