Exact(8)
The RDP-classifier was more efficient for the V4 than for the far less conserved and shorter V6 region, but differences in community structure also affected efficiency.
When larger evolutionary distances are considered, the genomic context becomes far less conserved.
The first T in the first repeat is far less conserved being present in only 11 promoters.
TE-derived TFBS sequences are far less conserved between species than TFBS derived from SSRs and non-repetitive DNA.
Unlike the genes of the cpeT-group, the slr1649-group is by far less conserved in its genomic localization (Table 1).
HS site positions derived from TEs are far less conserved (<1%) than non TE-derived HS site positions (~17%; Figure 3a), and the difference is highly statistically significant (χ2 = 6.5 × 10, P = 0; Figure 3b).
In an interspecies comparison, the sequence of the KIF14 NTE is also far less conserved than the other modules of the kinesin, yet the NTE is present in all known metazoan KIF14 family members.
Itai Yanai, Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, USA Reviewer Comments: Marino-Ramirez and Jordan show in this paper that HS sites are significantly more conserved in sequence than non-HS sites although HS sites containing TE-derived genes are far less conserved that HS sites lacking TE's.
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