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The Nilo-Saharan family classification is perhaps the most controversial because of inadequate research and the family is the most scattered.
Family classification is derived primarily from alignments of the sequences of the core motor domain.
Figure 6 shows the modulation family classification flow based on the MCA method.
Fig. 6 Modulation family classification flow chart based on the MCA method.
Post-processing step is necessary to convert the family classification to the all-against-all comparison information.
In particular, the database is organized with PIRSF family classification and maps to other family, function, and structure classification schemes.
A two-stage classification procedure which contains a "modulation family classification" and an "accurate classification" is proposed.
A two-stage pulse modulation classification method which contains a "modulation family classification" and an "accurate classification" is presented.
Additional methods were identified by Internet search via Google, looking for terms including "protein family classification", "gene family classification", and "sequence clustering".
To circumvent the problem of parameterization, we have developed a comparative strategy for gene family classification.
Nevertheless, the good performance of gene family classification programs depended on the tuning of program parameters.
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