However, the comprehensive maize genome sequence repositories, MaizeSequence http://www.maizesequence.org[ 1] and maizeGDB http://www.maizegdb.org/[ 4] provide limited information concerning gene families' categorization.
The details of total and differentially regulated transcripts in respective families along with categorization as up-regulated, down-regulated and total regulated transcripts in BDS and BHS is presented.
Precious studies have also classified miRNAs, for example, into families [67], but it has been shown that miRNAs can evolve rapidly [36, 37, 66], which is detrimental for their categorization into families.
The next major update of MASiVEdb will include a comprehensive phylogenetic analysis of its elements, and their categorization into families within and across species.
ProFITS, which utilizes both the B73 maize genome and full length cDNA (FLcDNA) datasets, provides users a comprehensive platform of maize annotation with specific focus on the categorization of families involved in the signal transduction process.
Thus, categorization of a family by trajectory or ranking by GSEA may not reflect the profiles of all genes in that family.
Each individual can be followed from the cradle to the grave allowing the reconstruction of life biographies and family composition based on ethnic categorization (Table 1).
Zhang et al. retrieved miR395 and miR399 homologs from nine and eight plant species, respectively, which formed the basis for the authors' categorization of the families as being lowly conserved [ 21]. miR395 and miR399 are specifically up-regulated in response to low nutrient conditions.
Future work can be expected by addition of other species, further gene family inferring approaches or even another categorization systematic: the technical background of O2EM is in principle capable to visualize gene groups beyond a categorization in families.
