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The velvet and Mapssembler assemblies failed to assemble the reads around the genomic island, most probably because of the presence of highly repeated transposase sequences, clearly identified in the complete sequence.
The above analysis alone cannot indicate if under-assembly has preferentially failed to assemble unannotated sequences.
Those size thresholds were chosen based on analysis of a preliminary assembly in which all reads within those size ranges failed to assemble, supporting the interpretation that they might represent sequencing artifacts.
Low assembly quality could contribute to the detection of unannotated sequences if under-assembly occurred and reads lacking homology to other organisms preferentially failed to assemble.
By combining these two assembly tools, we were able to join contigs and singletons that failed to assemble in MIRA to reduce sequence-level redundancy in our final unigene sequence set.
Page A9 FRANCE'S SOCIALISTS IN DIVISION France's Socialists failed to assemble any credible threat to President Nicolas Sarkozy's administration at a closely watched party congress.
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In males, however, transcriptome assemblers fail to assemble the neo-X and neo-Y into separate transcripts.
Such features fail to assemble well in automated genome assemblies.
Existing assembly algorithms thus frequently fail to assemble telomeric regions from short-read data.
(4) Proteins known to assemble in the region of the contractile ring before actin (Wu et al., 2003) continue to do so in a mutant cdc8 strain that fails to assemble a condensed actin ring, providing support for the contractile ring assembly pathway.
For burial during assembly, the unburied ESTs are re-CAP'ed, and if they fail to assemble together, the attempt to bury the clones is rejected.
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