Sentence examples for failed alignments from inspiring English sources

Lowering the identity threshold below which alignment is refused by PyNAST to 0.0001 reduced the number of failed alignments.

After removing sequences that failed alignment and splice site validation criteria (see Methods), 62,275 ESTs that align to bulk (non-rDNA) MAC chromosomes remained.

As previously reported this situation can result in a failed alignment as a target read r looks too dissimilar to any known target genomic sequence [ 13].

Overall, 59'316 sequences were validated on one or the other genome (arising from 48'217 different loci), 10'208 were found in the genome but failed alignment validation due to the PASA options used (see above), and 844 sequences did not align to the genome at all.

Automated alignments have failed to align the region N-terminal to the equivalent of Ser806 critical for ATP binding.

If the sequence failed to alignment, two more nucleotides at 3' end were deleted.

In addition, 816 segments with sequence in both genomes failed to align with LASTZ and also failed to produce consistent alignments with different Smith Waterman alignment implementations.

In each case, ∼11% of sequences failed to align, and 15% of were suppressed due to multiple alignments.

We found that 511 alignments failed the PTP test; therefore 4,805 were used for phylogenetic reconstruction analysis.

Additionally, approximately 5%% of RNA alignments failed to map to a gene with an assigned symbol, likely corresponding to unannotated structural or regulatory RNAs.

Of the remaining sequences, 7 ESTs (4%) were likely full-length because gapped alignments of the amino acids suggested poor evolutionary conservation at the N-terminus of the proteins, and 10 ESTs (6%) were unresolved because alignments failed altogether.