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Because ATF4 binding motifs were commonly observed proximal to PPARβ/δ binding regions, ChIP assays were performed to confirm that both transcription factors occupied these regions of DNA.
It is notable that transcription factors occupied about 20% members (9 out of 50 in C4, and 11 out of 50 in F4) in top 50 up-regulated gene lists (Additional files 11, 12).
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As discussed above, the first two groups of factors occupy a central place in the study of transnationalism but remain disputed, while the third is an innovation on the recent emphasis on national-level or global city destination characteristics in the survey-based analysis of the preferences and voting behavior of transnationally active migrants.
Genome-wide binding analyses have indicated that in both human and murine ES cells the Sox2, Oct4, and Nanog factors occupy hundreds of gene promoters [14], [15].
Since transcription factors occupy regulatory elements in the genome, we expected HOT regions to align with these elements.
Using publically available ChIP-seq data from LNCaP and VCaP cells, we could illustrate these factors occupying the FAIRE-seq regions in the tumors (Fig 2G).
In the Phalaenopsis transcriptome, we identified 786 unigenes consisted of 2,317 reads encoding putative transcription factors, occupying 1.83% (786/42,863) of the unigenes of Phalaenopsis transcriptome.
Other factors occupying node positions in this network are known as DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 (DDX58; linked to 14 downstream factors), IRF1 (linked to 13 downstream factors), and TNFSF10 (linked to 12 downstream factors).
The nature of the CFH and CFHR3 interactions with fHbp are therefore similar, with these complement factors occupying overlapping sites on fHbp, which is consistent with the high degree of conservation of their fHbp binding sites.
To gain insights into combinatorial control mechanisms (i.e. multiple transcription factors occupying the same binding site in a gene locus), we further developed a novel tool called combinatorial-GSCA (C-GSCA).
During the fourth week of December of last year, two versions of Cohen's "Hallelujah" — one by Jeff Buckley and one by Alexandra Burke, a winning contestant on the British talent show "X Factor" — occupied the No. 1 and No. 2 slots on the U.K. charts.
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