This cluster includes several contigs annotated as transcription factors, examples include: basic leucine zipper domain, zinc finger domain, WRKY and NAC domain transcription factors.
Many tethering proteins are known to be either Rab effectors or Rab exchange factors; examples include EEA1 (Christoforidis et al. 1999) and TRAPPI (Cai et al. 2005; Sacher et al. 2001) in endosomal membrane fusion and, more relevant here, TRAPPI (Sacher et al. 2001).
Examples include factors such as population structure, relatedness, punishment, policing and side-payments (see Table 1 for many more).
21 Examples include human factors such as behaviour, performance or communication; system factors such as work environment; and external factors beyond the direct control of the organisation, such as the natural environment or legislative policy.
66 Inflammation driven miRNA circuits are described in the literature and examples include nuclear factor-κB (NFκB) and hepatocyte nuclear factor-4α circuits.
Examples include:(1) YY1 factor binding site in Surf1/Surf2 genes [ 48, 49], (2) CCAAT box binding sites for HSF-1 (Heat shock factor-1)/ Bop1[ 50], E14/ATM[ 15], BRCA1/NBR2[ 16], and GPAT/AIRC [ 22], (3 GC boxes between the TSSs of TAP1/LMP2[ 51], DHFR/Rep-1 [ 42]and GPAT/AIRC[ 22], and (4 E2F factor binding site in TK/KF genes [ 20].
Examples include the confidence factor and the minimum number of cases to partition a set in C4.5 decision tree; the K value in KNN; the stop criterion, the number of neurons, the number of hidden layers, and others in artificial neural networks; and the soft margin, the kernel function, the kernel parameters, the stopping criterion, and others in SVM.
Other similar examples include epidermal growth factor receptor (EGFR), E1A binding protein p300(E300), Androgen receptor gene(AR) and so on (see Table 2).
Examples include Epidermal growth factor receptor substrate 15 (Eps15), intersectin, and most recently, Fer/CIP4 Homology domain only (FCHo) proteins (Syp1p in yeast) (Stimpson et al., 2009; Taylor et al., 2011).
Examples include p values (or Bayes factors, etc).
Examples include time series, multilevel modelling and factor analysis.
