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In general, a reasonable amount of intrinsic data is available, but extrinsic data are lacking; more research is needed for the hydrides to be used in practical applications.
The RNA-seq alignment results and assembled transcript sequences were used to generate extrinsic data for the gene prediction tool Augustus [ 30], which was used to predict gene models and transcripts from the draft genome assembly.
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Occurrence points were divided randomly into three parts: extrinsic testing data (50%), used for model evaluation; training data (25%), used for model development; intrinsic testing data (25%), used for intrinsic evaluation and tuning of model rules.
(Note: the metastate HMM uses only the intrinsic information in the data making no use of extrinsic information, such as ESTs, protein homology, etc).
The 'best subsets' methodology consists of an initial filter removing models that omit (omission error = predicting absence in areas of known presence) heavily based on the extrinsic testing data, and a second filter based on an index of commission error (= predicting presence in areas of known absence), in which models predicting very large and very small areas are removed from consideration.
We measure the impact of extrinsic information on candidate gene-sized regions using the HapMap data ENCODE regions by simulating association studies with unequal priors at the polymorphisms.
The consideration and indeed necessity of that type of extrinsic information is paramount for all proper evaluation and interpretation of test data.
Turbo decoding principle is based on an exchange of probabilistic information, called extrinsic information between two (or more) component decoders dealing with the same received set of data.
In shuffled decoding, the decoder updates the extrinsic information as soon as possible, without waiting for all the copies of a given data to be processed.
Extrinsic information ( z ).
Extrinsic information transfer.
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