Sentence examples for extraction of sequence from inspiring English sources

Sorting of sequence reads based on index sequences and the subsequent extraction of sequence tags from reads was conducted using a script written in Perl.

We compared the final sequence assembly generated by extraction of sequence signals using the standard Illumina output (GAPipeline-1.0rc4 for LF) against that generated using the Rolexa algorithm [27].

CisFinder includes auxiliary functions: comparison of DNA motifs with databases of known binding motifs of TFs, search for motifs that match to PFMs, visualization of sequences and TF binding motifs with a CisView browser and UCSC genome browser, and extraction of sequence fractions and subsets of sequences.

SCORPION2 has a set of search and prediction tools that allow users to extract and perform specific queries: text searches of scorpion toxin records, sequence similarity search, extraction of sequences, visualization of scorpion toxin structures, analysis of toxic activity, and functional annotation of previously uncharacterized scorpion toxins.

After extraction of sequence-ligand pairs from the database, we align the sequences and calculate various molecular descriptors for the related ligands.

For a given amino acid variation, PolyPhen performs several steps: (a) extraction of sequence-based features of the substitution site from the UniProt database, (b) calculation of profile scores for two amino acid variants, (c) calculation of structural parameters and contacts of a substituted residue.

The overlaps between regions and extraction of sequences were done using BEDTools [ 19].

These results again provide strong evidence for biologically meaningful extraction of sequences by the LDSS method.

The motif identification includes the following steps: extraction of sequences, background selection, GC-content normalization (for background sequences), and finally motif discovery (including novel motifs and known motifs).

Extraction of sequences, assignment of reads to individuals and generation of alignments of variants present in each amplicon was performed with the custom software written in Java and available from http://code.google.com/p/jmhc/.com/p/jmhc/

On the other hand, a tag-based like method such as DK-MICROBE offers a greater chance of identifying rare microbial associations through extraction of sequences from specific locations in microbial genomes.