Similarly, we used Ensembl for extracting the paralogous relationships for each gene, but there are other available extraction algorithms and databases for inferring paralogy [ 62- 64].
BPP, APF and ASM performed the data extraction and prepared databases.
MC did the computational analyses, data extraction and curation and database design.
Three investigators reviewed all articles, performed data extraction and complied the database using equal digital templates (VS, dHC, PP).
DG performed data extraction and KL developed database linking with regional data.
Many user-friendly tools/interfaces have been integrated in CPPsite for extraction and analysis of database.
But often, nuts-and-bolts skills like spreadsheet building and database extraction are not part of university curriculums.
Typically, surface proteomics analysis consists of surface biotinylation and surface protein purification, protein solubilisation, protein and/or peptide fractionation, peptide digestion and extraction, tandem mass spectrometry and database searching and protein identification and quantification (Wu and Yates, III, 2003; Pham et al, 2010).
The resulting process can be defined as semi-automatic because the processes of extraction and comparison between databases can be largely automated, yet a manual curation remains necessary to analyse and solve discrepancies.
These data were then key stroked into the database, or terms were semi-automatically extracted from blocks of text via mark-up, extraction, and comparison to existing database content.
