MST extracts the connected subtree (subnetwork without any loop) which maximizes (or minimizes) the sum of the weights on all the extracted links and one of the most popular methods of analyzing time series correlations in econophysics.
The current availability of extracted links is periodically checked by the system.
We extracted linked hospital and death records for all patients aged ≥60 with an admission for ADR in 1980-2003 in Western Australia.
There are two main contributions of this study: first, it provides a comprehensive analysis of the existing sources of links between two biological databases and the literature, including three sources of curated links and one source of automatically extracted links.
We extracted linked data for WA residents aged at least 65 years between 1st January 1992 and 31st December 2006 from the Hospital Morbidity Data System HMDSS), the Death Registry, the Electoral Roll, the Medicare Benefits Scheme (MBS), and the Pharmaceutical Benefits Scheme (PBS).
htmlparser [23] is a Java based html parsing library we use to parse HTML pages and extract link information from them.
Generation of entity coreference chains provides a means to extract linked narrative events from clinical notes, but despite being a well-researched topic in natural language processing, general-purpose coreference tools perform poorly on clinical texts.
The recent BioCreative III Workshop (14) comprised a 'Gene Normalization' task (15) that challenged participants to automatically extract links between gene mentions in the text of articles from the literature and records from the Entrez Gene database.
We applied association rule mining as the second method, which has been previously used to successfully extract links between Gene Ontology [GO, (23)] concepts from the three different branches of GO (24 26).
Other recent work focused on specific data types, such as brain regions (16) and DNA sequences (17), to automatically extract links between articles in the literature and relevant biological databases namely, five neuroanatomical databases (16) and the sequence database Genbank (17).
