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A Fortran library of algorithms (Par_Seq) has been designed and used in searching for the similarity of sequence motifs extracted from the multiple sequence alignments of diverse groups of proteins (query motifs) and the target motifs which are encoded in various genomes.
The sequence alignment between hTAS2R38 and the eight structural templates were extracted from the multiple sequence alignment considering the entire family.
The analysis in this paper is based on data extracted from the Multiple Indicator Cluster Surveys (MICS).
Consensus sequences for each cluster were extracted from the multiple alignments using the consambig tool from the EMBOSS suite [ 87].
We discovered that gene signatures extracted from the multiple training datasets, such as ITI, performed better and showed greater overlap with our gene signature, that is, 21%.
The typical domains of each HM family were extracted from the multiple alignments and used to build specific HMM profiles with HMMER v2.1 [ 74].
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This program was accomplished by applying the median filter to the image, which only includes the rock information that was extracted from the multiple-threshold segmented image.
The alignments for each of the protein products were extracted from the full multiple alignment.
While in the subthreshold region, the interface traps with continuous energy of E C-0.4~0.57 eV and density of 0.6~1.6 × 1012 cm−2 were extracted from the commonly observed multiple G p/ω peaks.
Viral RNA was extracted from the samples, and multiple reverse-transcriptase PCRs were carried out.
Data for this paper were extracted from the 2006 Ghana Multiple Indicator Cluster Survey (MICS).
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