Sentence examples for extract the interactions from inspiring English sources

Most graph-theoretic studies of protein-interaction networks extract the interactions from curated databases (Jeong et al., 2001; Schwikowski et al. 2000; Spirin and Mirny 2003; Wuchty et al. 2003).

Because the conjoint triad approach did not take neighboring effect into account and the interactions usually occur in the discontinuous amino acids segments in the sequence, on the other work Guo et al. developed a method based on SVM and autocovariance to extract the interactions information in the discontinuous amino acids segments in the sequence [ 26].

Because the conjoint triad method did not take the neighboring effect into account and protein interactions usually occur in the discontinuous amino acids segments in the sequence, Guo et al. proposed an approach based on SVM and autocovariance feature representation which extract the interactions information in the discontinuous amino acids segments in the sequence [ 22].

Adachi et al. (2017) proposed a procedure to extract the interaction effect and showed that the interaction can have a greater influence on heavier precipitation, whereas Kröner et al. (2016) showed that the nonlinearity could be negligible in their case.

The composition dependence of characteristic pressure was first used to extract the interaction parameter (ΔP∗) and Flory interaction parameter expressed in the second derivative of the free energy of mixing (χsc).

Based on the processed results of GENIA Tagger, we used the rule-based approach to extract the interaction descriptions.

For this purpose, we extracted the interactions between our set of genes (Mir-DiseaseExt and Mir-DrugExt) both from a functional protein-protein network [25] and a signaling network [30].

As this database is multi-organismal, we only extracted the interactions between human genes.

We extracted the interactions of proteins in a known motif from this interaction information.

We manually extracted the interactions between these 11 RTKs and 21 SH2 domains from literature.

Therefore, after extracting the interactions from the literature, we constructed a disease-specific gene-interaction network, where the nodes are the seed genes and their neighbors, and two genes are linked, if we have extracted an interaction between them.