Sentence examples for extract pathways from inspiring English sources

Applying this analysis on large-scale data enables researchers to extract pathways with significant alterations in CNV and methylation status.

A high number of resources and databases is available to extract pathway constraints from biological data.

3M explicitly uses the Markov structure over all extracted pathways to identify the functional components.

We also extracted pathways from the result of gene ranking, and found these pathways reflect different aspects of malaria pathogenesis.

Finally, we analyzed the functions of the prioritized genes by extracting pathways on the basis of gene ranking.

As the correlation along these edges will be 1 it is clear that pathways consisting largely of the same gene will dominate the list of extracted pathways.

We have developed a system, PWTEES, which extracts pathway interactions from the literature utilizing an existing event extraction tool (TEES) and pathway named entity recognition (PathNER).

Finally, we discuss how the software enables automated sample clustering and classification using the extracted pathway expression variances.

Setting ρ allows for explicit control over the diversity of genes selected within the extracted pathway list.

We extracted pathway terms using a text-mining tool PathNER which used soft dictionary matching and rules to identify pathway terms in the literature [ 24].

Extracting pathway-gene and pathway-gene pair relationships from a GPML file is also accomplished using a strategy similar to mining KGML files.