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This is a new approach for automatic ontology population that uses an ontology to automatically generate rules to extract instances from text and classify them in ontology classes.
We designed a software tool that employed regular expressions to identify and extract instances of documented blood pressure values and anti-hypertensive treatment intensification from the text of physician notes.
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For the classes of cellular component, biological process, and molecular function, we extracted instances from the corresponding namespaces of the GO.
We extracted instances of NNN triplets where each edge is in a known genetic interaction, a combination that is highly enriched for this triplet class (p = 3 × 10-6), and plotted as a graph (Additional File 6).
To efficiently extract temporal instances with limited numbers of surface forms, the proposed system uses well-refined finite state automata.
In short terms, Open IE algorithms extract relation instances (in the form of triples) from open domain [21].
A modified depth-first search algorithm is used to extract motif instances from the underlying Ondex knowledge network.
To extract binary instances of the glycolysis pathway within our extracted data we scale the observations to have a mean of zero and standard deviation of 1.
To extract binary instances of the pentose phosphate network within our extracted data we scale the observations to have a mean of zero and standard deviation of 1.
Though Iraqi oil has been extracted for more than 70 years, parts of the country are still remarkably unexplored.In some areas oil may exist but will be hard to extract: for instance in the western desert province of Anbar, in the oil-poor Sunni heartland.
For some text data, we utilize simple text mining method to extract required instance triples.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com