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Furthermore, a comparison in sequence coverage between two distantly related species (one bird and one mammal) allows us to evaluate to what extent sequencing bias is conserved across evolutionary distant lineages.
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Here, we aimed at quantifying to which extent sequence properties contribute to the DNA replication time in budding yeast.
To some extent, sequences from the same taxonomic class cluster together, but there is a little intra-specific structure in the phylogeny, which means that hardly any taxonomic class-specific signatures could be attributed to the FAEs sequences.
It remains unclear to what extent sequence variants modulate functionally critical post-translational modifications, such as phosphorylation, glycosylation and sulfation.
Finally, we asked to what extent sequence features in viruses correlated with corresponding features in their hosts.
To what extent sequence variations in microRNA genes are associated with tumorigenesis became a matter of intensive investigation.
One of the initial concerns is to what extent sequence identity in homeologous regions would have on whole genome shotgun sequence assembly.
Assortativity analyses were used to quantify to what extent sequences from any location and depth have close homologs in more than one environmental sample of the data set.
To some extent, sequences from the same population cluster together, but there is little intraspecific structure in the phylogeny of the complete alignment.
To a lesser extent, sequences were present in carpels and young buds and stamens and young buds, followed by stamens and carpels alone.
Preferential patterns of connections can then be analyzed in these labelled graphs, using assortativity estimates that quantify to what extent sequences with the same label (for example, from a given depth or location) connect with each other rather than with differently labelled sequences [ 47].
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com