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It is a bit worrisome that the chimp and human iPSCs show such extensive differences in expression, since it may suggest a species-specific response to the (highly artificial) iPSC protocol rather than intrinsic differences.
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Similar studies have also revealed extensive differences in gene expression between males and females [ 3].
We have found very extensive differences in gene expression between first-stage larvae (L1) passed in faeces and infective L3s preparing to infect hosts.
As anticipated, comparison of TT 1+2 and ATSC SAGE libraries using Monte Carlo simulations revealed extensive differences in gene expression between total testis and somatic cells of adult testis.
We found much more extensive differences in gene expression patterns between field environments, with 48 clusters (15,103 genes) that had a correlation coefficient below 0.8.
In addition, when samples from experimental groups in different conditions were compared, 4093 and 2444 DEGs were identified in muscle and liver, respectively, indicating extensive differences in gene expression between starved and re-feed fish.
These results demonstrate that expression differences between black (iRT) and brown (irT) seed coats are not limited to anthocyanin genes, and may suggest extensive differences in gene expressions and phenolic compositions.
Finally, in some tissues individual outliers show extensive differences in the relative expression between both species.
We observed a broad epigenomic response associated with an extensive difference in gene expression.
These results may suggest extensive differences in the underlying gene expressions.
These methods constitute the algorithmic foundation of RNA-Seq based approaches, but are not directly applicable to RNA-Seq data owing to the extensive differences in abundance, error sources and biases of the underlying expression measurements.
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