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After the analysis of a more extensive alignment, the most informative Swissprot hits were selected.
Comparison of bin-mapped wheat ESTs [14] with mapped Brachypodium BES identified extensive alignment of some large contigs with wheat chromosomes.
We estimated a value of 0.5 s for τ, which described the measured transition of SF alignment from essentially no alignment at 0.01 Hz to extensive alignment at 1 Hz.
The kinase aficionados would probably appreciate a more extensive alignment.
The ycf1 gene was not used due to extensive alignment ambiguity.
If so, a more extensive alignment of the amino-acid sequences would be needed to assess the homology inferences at each of the intron-containing sites.
Similar(50)
Author's response : This section has been revised and much more extensive alignments are presented and phylogenetic analysis performed.
Author's response : We have revised the text to discuss these aspects and have included tables of BLASTp hits and extensive alignments.
Extensive sequence alignment analyses showed that there was high level but fragmented sequence homology within their captured gene fragments among a number of newly identified helitrons.
Based on extensive sequence alignments and a consensus constrained transmembrane helix prediction algorithm [ 5], the N-terminal segment is predicted to contain five transmembrane helices.
This explanation is supported by the observation that the rMonkey algorithm, which performs extensive re-alignment of the sequences during scanning, does slightly better than Motiph, which simply ignores gapped regions.
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