Sentence examples for extension of the alignment from inspiring English sources

While this segment is good for modeling the structure locally, extension of the alignment to cover the entire domain results in a wrong fold prediction.

Cyclic_exonerate launches exonerate with a custom scoring matrix (derived from BLOSUM62), which is favoring the extension of the alignment over Sec-encoding UGA codons: in the query protein selected from the profile, the position(s) aligned to Sec are replaced with a flag character.

The algorithm performs ungapped extension of the alignments as it is sufficient for the compartmentization and gaps in the final alignments are discovered using the target function of the refinement stage.

The algorithm uses dynamic programming and is an extension of the Smith Waterman local alignment algorithm (Smith and Waterman, 1981).

An extension of the concept to the alignment of two arbitrary POGs will be discussed in detail.

Another relevant extension is the alignment of multiple PPI networks, corresponding to more than two species, via pairwise comparisons as it was presented by Singh et al. (2008).

We first explain our methods for (i) listing possible extensions for a given e-node in the e-graph, (ii) scoring each extension based on the alignment of short-insert read-pairs and (iii) scoring each extension based on the alignment of long-insert read-pairs.

The LVZ in the lower crust is also located on a deep extension of the eastward-dipping aftershock alignment (e.g., E-W cross section along the latitude of 38.8750).

We tested PAGAN in the extension of large alignments and found the initial results very promising.

Spurious extension of an alignment due to compositional bias is possible but highly unlikely given the composition-based statistical corrections implemented in the current version of BLAST [ 42, 43].

In principle, the self-alignment repeat-detection methods are the extension of an alignment-based homology-detection approach.