Sentence examples for extension footprint from inspiring English sources

First, to distribute the pause over three adjacent codons, the probability of P-site codon locations were set at P x = P x + 3 = P x + 6 = 3 P. Second, to model asymmetric extension, footprint lengths were extended at their 5′-end for P-site codon locations at x + 1 to x + 6 by the distance between the P-site and x. 'The caterpillar model' of SD-mediated footprint elongation is shown in Figure 1B.

To model SD site-dependent extension of footprint lengths, footprints were generated under a similar model with two alterations.

Chromatin was subjected to MNase or DNaseI digestion for the low-resolution indirect end-labeling (IEL) analysis or primer-extension footprinting, respectively, as described earlier [ 14].

Addition of RNA polymerase led to an extension of the footprint to +14 and produced a new footprint from −61 to −59 upstream of the Mor-binding site (Artsimovitch et al. 1996; Ma and Howe 2004).

In this work, we analyzed ribosome profiling data obtained for Escherichia coli and Bacillus subtilis and have shown that the length and distribution of ribosome footprints at SD site-containing mRNA regions is consistent with 'the caterpillar model' of progressive footprint extension.

In particular, we study the grey water footprints (a measure of the assimilation capacity of water resources) of production, at both the regional and business level, with spatially explicit information, and the extension of those footprints throughout the supply chain, while also computing the water footprints of consumption at the regional level.

To investigate directionality of footprint extensions, we analyzed aggregated density of both 3′ and 5′ footprint ends relative to SD site position for the footprints of individual lengths.

However, as we demonstrate here, the footprint extensions are sequence dependent and are not equivalent at the 5′- and 3′-ends.

In this case, ribosomes would remain bound to the same SD site while decoding several subsequent codons leading to asymmetric progressive extension of ribosome footprints as shown in Figure 1B.

For those extensions, we tabulated the footprint reads that aligned to the CDS and putative extension, masking out regions normally covered by start and stop codon peaks as described (see section 'Readthrough rates', above).

Although it was in a pretty dire state, untouched since the Seventies, the place had masses of potential and was in a great location, backing on to the playing fields of an adjoining school and with enough space to allow an extension to double its footprint.