Sentence examples for extends reads from inspiring English sources

NPS extends reads in the 3' direction to 150 bp, corresponding to the length of the MNase-digested mononucleosomal DNA [ 11, 17].

For example, miR-456 had 7 fold more extended reads than non-extended reads, and miR-24 had 23,754 extended reads compared to 7,212 non-extended reads (Additional file 10).

A more detailed examination of the relationship between read length and repeat resolution in a small set of genomes reveals that extending reads produces consistently diminishing returns and this appears to be consistent among bacteria.

Reads were directionally extended by 150 bp, and extended reads were profiled along the element.

The number of extended reads in each p53 peak was compared with the number of extended reads in the same region in an IgG-precipitated sample and enrichments were calculated.

'bedGraph' files were generated from these uniquely-mapped, non-duplicated, extended reads for visualization of aggregate genomic coverage.

The number of extended reads overlapping each GATC fragment was then calculated using the BEDTools coverage utility [ 91].

Noise in methylation signal, representing extended reads falling in regions without CG dinucleotides, was quantified as the summation of reads falling into bins with zero CpG content.

Bed files were used to create read density (wig) files by extending reads to 200 bp length and creating 25 bp bins.

The number of trimmed extending reads at these loci ranged from 552 to 4,677 with an average of 897 (Additional file 3).

To generate the profiles shown for the TT2 wt and Setdb1 KO cell lines, extended reads were first agglomerated for 5'- and 3'-flanks.