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In the corresponding holoenzyme structure, this linker docks as an extended strand onto the surface of the large lobe.
The secondary structure indicates that the predicted 3D structure of triosephosphate isomerase of P. falciparum 3D7 contains 48.37% a-helix, 29.27% random coil, and 16.67% extended Strand.
From the length of each C-C bond (0.142 nm) in the graphite lattice and the dimension of an EAK16-II β-strand (∼6 nm), one extended strand would cover the length of ∼24 carbon atoms in a row of the graphite lattice (Figure 6a).
The trailing Pif1 has been suggested to relieve topological stress and displace the newly extended strand.
The SDSA sub-pathway of DSB repair involves displacement of the newly extended strand from the D-loop followed by annealing with its original complementary strand.
The predicted secondary structure of ChiBjp was 31.66% alpha helix, 20.64% extended strand, and 47.70% random coil using GOR4 program, as shown in Figure 3.
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Secondary structure analysis revealed eIF5A having 24.53% α-helices, 8.81% β-turns, 23.27% extended strands and 43.40% random coils.
Unique sequencing reads were mapped to the reference genome build mm8 (February 2006), extended strand-specifically to 200 bp and displayed as density-plots using the UCSC genome-browser.
The secondary structure prediction of Exig_1739 showed that it has additional alpha-helices and extended strands when compared to Exig_2637.
Figure 4 represents the distribution of the expected number and the number of coevolving sites observed in Figure 3 in the alpha helices, beta-strands and extended strands.
A prediction performed for the amino acid sequences of the unprocessed forms of six Lactobacillus S-layer proteins suggested on average 14 % α-helices, 39%% extended strands and 47 % random coils in these proteins (Åvall-Jääskeläinen and Palva 2005).
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