Sentence examples for extended alignment from inspiring English sources

SEM examination of the MWCNT films showed extended alignment after 24 h of oxidation.

Could this extended alignment be due to residue composition or other bias (e.g. Nitrosoarchaeum sequences are less derived than FtsZ)?

The accuracy of the resulting extended alignment was measured as the proportion of true homologies recovered between the QS and the closest human/mouse reference sequence.

The accuracy of the resulting extended alignment was measured as above except that each QS was compared with the closest reference sequence.

The protein sequences of the experimentally verified glucose transporters were aligned by accessing the PRALINE structural alignment tool [ 49] via the SOAP interface and using the following settings: BLOSUM62, PSI-BLAST pre-profile processing (Homology extended alignment, 3 iterations), structural features: DSSP-defined secondary structure search, PSIPRED and TMHMM, fasta outputfile.

The random walk comprises the following components: Changing model parameters Changing extended alignment Shifting the boundary of an existing fast or slow region Creating a new (or deleting an old) fast or slow region The first two types of moves are described in [ 31], and the last two are described in the Methods section.

Those RefSeq exons that have full extended alignments were called the clearly orthologous exons.

Gap initiation and extension penalties are also utilized, while the number and lengths of gaps within extended alignments are not restricted.

The likelihood of a tree under the multiple HMM can only be easily calculated when we augment the tree with additional data known as extended alignments.

The CV method does not require extended alignments, predefined operational orthologs, or even predefined homologs (for details see material and methods).

Based on the phylogeny obtained from reference tetraspanin seqences, we produced extended alignments and phylogenetic trees for each ancestral vertebrate tetraspanin lineage (seventeen in total) by including more species.