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The results show that Dictyostelium cells can modulate food searching by changing the probability distribution to extend steps or turns, and then randomly draw from this distribution the steps and turns to make longer or shorter runs.
The temperature T determines to which extend steps decreasing the log-likelihood are allowed, thus reducing the risk of remaining in local maxima.
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However, it is seemingly impractical to start with the most fundamental structure of the system, and then to extend step by step to obtain its holistic behaviors.
This paper presents a new approach to further extend STEP's capability for the simultaneous energy targeting, optimal placement of process utility systems that include flue gas streams with variable-temperatures and flowrates, and design of heat recovery networks featuring such targeted utilities.
The extend step receives alignments that passed the filter step.
It could very easily be integrated in the extend step.
To include gaps, the extend step is carried out with a dynamic programming algorithm (NW).
Then, a carefully optimized vectorized Smith Waterman extension is run to perform the extend step.
It should be noted that if the filter step provides good efficiency, no optimization of the extend step is required.
Yet if the filter and extend step uses different scoring schemes, filters will no longer be guaranteed to discard only false positive alignments.
Indeed, if most false positive alignments have already been ruled out, the extend step should only take a negligible fraction of the total execution time.
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