Exact(27)
Processed intensities from feature extraction analysis were imported into the TIGR Multiexperiment Viewer software (MEV 4.1) and significant genes at a p-value of ≤ 0.05 and more than two-fold difference in expression were defined as differentially expressed.
Four genes with unknown functions that showed ovary- or testis-enhanced expression were defined in our study as gez1-gez4 ('gez': gonad-expressed in zebrafish; see Fig. 2D, Fig. 2F and Table S7).
The molecular signals required by resting (G0) B cells for the induction of cell cycle entry, IL-2 production, and high-affinity IL-2 receptor (IL-2R) expression were defined and the effects of incomplete activation signals on the subsequent response to complete signals were examined.
Several criteria of tissue-specific expression were defined.
Samples were segregated into low, medium and high expression of CCNE1, where tumors with high expression were defined as those above the median signal value + [0.5 x median absolute deviation (MAD)] and low expressing tumors where those below the median signal value – [0.5 *MAD].
Cases without high expression were defined as low expression.
Similar(33)
If less than 10%% of the neoplastic cells expressed HIN-1 the expression was defined as being weak, and if more than 10%% of the neoplastic cells expressed HIN-1 the expression was defined as being strong.
Differential gene expression was defined using the statistics/threshold combination.
Target-network expression was defined as sum of z-scores of individual genes.
For 19 K562 half-cell data, the differential gene expression was defined with FDR < 0.1.
For ~400 K562 single cells, the differential gene expression was defined with FDR < 0.05.
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