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The degree of nucleosome instability correlates well with their degree of expression variety but not their intensity.
The "nucleosome dynamics" map provides the new significant correlation with the degree of expression variety instead of their intensity.
On the other hand, cluster 3, the "stable and open" cluster, shows the smallest expression variety Bonferroni-adjusted PP < 1.5e-12 in all comparisons).
For a confirmation, we did an opposite analysis: we classified the genes into 20 clusters based on the degree of their expression variety.
Cluster 1, the "dynamic and open" cluster, shows the largest expression variety Bonferroni-adjusted PP < 3.0e-3 in all comparisons from Wilcoxon test).
As shown in Fig. 5c, clusters with larger variety tend to have higher entropy values while clusters with smaller variety show lower values, an observation which supports our claim that "dynamic" promoters often regulate genes with larger expression variety.
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Among these proteins, NUDT16L1 contains no defined domain at all and PAGE1 has no known function except its specific expression in variety tumors.
Opn gene can produce low grade expression in variety of cells, such as fibroblast, differentiated osteoblast and osteoclast cells and bone marrow derived cells [ 13].
In looking for different roles of the other sub-clades in the regulation of gene expression, a variety of possibilities exist.
Additionally, we have detected the expression of variety-specific genes at the transcriptome level.
On the other hand, one probe showed statistically significant differential expression between varieties under control conditions but was greater in the Cl− excluding rootstock (data not shown).
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