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Finally, the results presented here are publicly accessible as Oryza sativa Mitochondrial rna Expression Server (OsMES: http://bioinf.mind.meiji.ac.jp/cgi-bin/gbrowse/OsMes/ search).ac.jp/cgi-bin/gbrowse/OsMes/ search
Our transcriptomic data (Oryza sativa Mitochondrial rna Expression Server: OsMES) is publicly accessible at [ http://bioinf.mind.meiji.ac.jp/cgi-bin/gbrowse/OsMes/ search].ac.jp/cgi-bin/gbrowse/OsMes/ search
Primers used for RT-PCR analysis were listed in Additional file 6. CMS: cytoplasmic male sterile; GFF: Generic Feature Format; iORFs: inter-genic ORFs; LTR: long terminal repeat; ncRNA: non-coding RNA; ORFs: open reading frames; OsMES: Oryza sativa Mitochondrial rna Expression Server; TEs: transposable elements; TU: transcriptional unit.
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Owing to the clearly distinct functions of the EMAGE, GXD and GENSAT servers with respect to the OMIM server, a simple classification has been established that divides the servers into gene-expression servers and general biological information servers.
Several tools have been developed for clique identification, like Clique Finder within the Arabidopsis Co-expression Tool server [ 70] or MIClique [ 68].
Covered software includes Visual Studio Professional Edition, XNA Game Studio, Expression Studio, SQL Server and Windows Server.
To answer the first question, the client launches a query to each of the three gene-expression annotation servers, as shown in the previous section.
The fourth service complements data retrieved by the three aforementioned gene-expression annotation servers providing information about the pathological process in which the gene/s under study is/are involved.
All pertinent microarray data are available through the Children's Hospital Research Foundation expression database web server within the ExpressionDB folders of the Incyte Mouse GEM1 chip genome.
Furthermore, conserved motifs (MEME server), gene expression and microsyntheny were examined including reporting of all new experimental data and determination of orthologues and paralogues.
We report a web server for expression profiling of alternatively spliced transcripts using microarray data sets from 31 standard 3′ Affymetrix arrays for human, mouse and rat species.
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