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In the gene expression search page, the differentially expressed gene data between P. euphratica and P. tomentosa from the time-course profiling experiment is exhibited intuitively.
(a) A snap shot of the web interface for gene expression search in ROAD.
Availability: The gene expression search applications and SPARQL endpoints developed for OpenFlyData are deployed at http://openflydata.org.org
Gene expression search can be initiated by entering one (or multiple) gene(s) or microarray element ID s), such as RGAP ID, RAP ID, KOME ID, Affymetrixprobeset ID, or by uploading a file containing them.
(b) The detail page of search gene expression, search methylation peaks and DMRs.
Two algorithms are proposed for CBG expression search: forward search and backward search.
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Mongo DB provides a built-in regular expression searching method.
In particular, Mongo provides the regular expression searching method with the perfect accuracy.
The interactive motif search tool SIRW combines regular expression searches with keyword searches of text annotation (Ramu, 2003).
GO terms were assigned to gene symbols after record linkage in which regular expression searches were required.
These motifs were used in regular expression searches of an OR and a non-OR MySQL databases.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com