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The "signature" for the TSP classifier is the pair of genes that most consistently changes its relative expression ordering between the two groups of patients and the corresponding decision rule for a new profile is determined entirely by the ordering between these two genes: choose group one if the observed ordering was most often seen in group one and group two otherwise.
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The TGCATGC and GCTAGC motifs were found in the minimum expression ordered data, along with many other motifs that represent possible cis elements.
The DMTSS experiments were performed following a descending expression order, assuming highly expressed genes would most likely produce unambiguous 5' ends, and we stopped the experimental search when the success rate was low.
We prove that regular expression order-sorted (REOS) unification is of type infinitary and decidable.
However, the mul doublets do not capture the expression orders between genes.
On the other hand, the sign doublets capture the inter-gene expression orders alone.
Next, the patients were put into rank expression order based upon this average Core MYC signature expression value.
This expression order of the CsPRR genes resembles that of the Arabidopsis PRR genes (PRR9→PRR7→PRR5→PRR3→TOC1) more than the order noted in the monocotyledons rice or Lemna spp. [15], [19], [21].
The temporal expression order of the P. flava ParaHox genes is the same as that of the chordate ParaHox genes.
We chose three cancer cell lines with the following CXCR4 expression order: Jurkat > U937 > K562 and incubated them with 0.5 μM PU-KKmt-Bpy separately for 2 h.
In the GSTA cluster on chromosome 6, a clear assignment of reads permitted the expression order of GSTA1 (249) > GSTA2 (144) > GSTA3 (16) > GSTA5 (9).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com