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It is important to note the difference between non-expressed reactions (expression evidence strongly suggest the absence of such reactions) and non-gene associated reactions (expression evidence not applicable).
Genes with expression evidence are boldfaced.
For 219 loci, one or more of the predicted gene models lack expression evidence.
Of these 1,583 loci, only four loci lack expression evidence, such as one or more FL-cDNA or EST.
Gene expression data for these loci are collected in the sheet "incomplete expression evidence" of Table S1.
The sheet "incomplete expression evidence" contains a subset of the data for the 223 loci that include the following: all splicing variants for four loci that lack FL-cDNA or EST expression evidence and at least one splicing variant for 219 loci that lack expression evidence.
Evidence for monocupin gene expression was derived from the Rice Gene Expression Evidence page from TIGR (http://www.tigr.org/tdb/e2k1/osa1/locus_expression_evidence.shtml) and KOME (http://cdna01.dna.affrc.go.jp/cDNA/).jp/cDNA/
The massively parallel signature sequencing (MPSS) database (http://mpss.udel.edu/rice/) was searched for 20-base signatures from 22 mRNA libraries representing 18 different tissues/organs in rice expression evidence analysis (Nakano et al. [2006]).
A significant fraction of predictions is supported by existing expression evidence.
We computationally tested this hypothesis five ways, and in addition found supporting expression evidence from ESTs (see below).
Biochemical and gene expression evidence supports that p38γ MAPK is required for endurance exercise-induced mitochondrial biogenesis and angiogenesis, but not fiber type transformation.
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