Sentence examples for expression edge from inspiring English sources

We refer to these associations as environmentally determined genetic expression (EDGE) affects.

We analyzed the time course data using 2 different statistical approaches, ANOVA and a time-course specific statistical method implemented in an open source software program, the Extraction of Differential Gene Expression (EDGE, available at http://www.genomine.org/edge/) [24].

RMA summarized data were used for analysis using Extraction and Analysis of Differential Gene Expression, EDGE [ 36] and the timecourse package [ 37] in Bioconductor [ 38].

Close examination of every TNFα expression edge revealed considerable concordance between the definition of the edge (based on the published literature) and the actual expression of the target node in response to NKX3.1.

Eighteen of these edges were defined by a gene regulatory relationship (i.e. expression edge) thus signifying genes that are known to be either induced or suppressed by TNFα signaling.

An optimal discovery procedure (ODP) method, implemented in the Extraction of Differential Gene Expression (EDGE) [ 64] program, was used to assess the significance of the differential expression of the genes between paired tumour and normal tissue samples of the same patients.

For simplicity, only expression edges were included in Figure 7A.

The expression edges could be defined using other theoretical approaches [ 9],[ 14], such as using a generalized definition of the pairwise correlation, as in the mutual information method.

For example, if five co-expression networks and two physical interaction networks contained an edge between the same pair of genes, the resulting network would contain one co-expression edge and one physical interaction edge for that pair.

To reduce the number of false positive co-expression edges and to identify putative functionally related gene clusters, the Markov Cluster Algorithm (MCL) method was applied [24].

S. pombe exhibits many co-expression edges, especially with TCP1/CCT1 that are absent in S. cerevisiae.