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Functions and canonical pathways identified by IPA as differentially expressed down regulated genes in islets from ob/ob vs. WT mice (fold change ≥ 1; P ≤ 0.05), with no significant changes in islets from POKO vs. WT mice.
This leads to a discussion of: what the numbers mean (expressed down to the unit level) and just how reliable they are; who is responsible for these numbers and what their biases might be; and alternative predictions to consider.
These data are shown in Additional file 3. Genes, and thus clusters, were differentiated into those constitutively up-regulated (expressed), down-regulated (under-expressed), variant, or none of the above across patient samples.
However, deconvolution to cell-specific expression yielded 8 probe-sets identified as differentially expressed (down-regulated in ARs) in monocytes (FDR ≤ 20%— Fig. 3).
Of these genes, only the zinc transporter slc39a2 was differentially expressed (down-regulated in the kidney).
Only one of these genes (DMBT) was found differentially expressed (down-regulated) in IM as well as PO treated animals.
Although a total of 1,245 genes were differentially expressed in the liver after low-dose methapyrilene administration for at least one time point, only 2 genes were consistently differentially expressed (down-regulated) across all three time points.
23 The UM-SCC-17B cell line was used to produce stable clones that expressed down-regulated levels of SIRT3 using SIRT3-shRNA, and scrambled-shRNA was used for controls (Fig. 5A).
Similar to the DsRed lentivirus, WNT1 and GFP were expressed down the length of the intestine and were primarily restricted to the mesenchyme.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com