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In addition to differential expression, it is useful to also display a metric of a protein's or mRNA's expression level, which provides additional information for proteins/genes found expressed or differentially expressed under one condition but not in another, or at one level (protein or mRNA) but not the other.
The expression pattern of these five zinc responsive genes as well as the other genes to be discussed in this section are visualized in Figure 8. Also, amongst the 54 dubious genes, there are many genes that are highly expressed under one or a few cultivation parameters, while having a constant expression over the remaining conditions.
In the second set, genes were identified that were expressed under one experimental condition or the other.
Consistent with previous studies, we find that the majority of yeast genes are expressed under one or more different conditions.
We identified six and nine OsPTR genes that were differentially expressed under one or more of the phytohormone treatments compared with the control in MH63 and ZS97, respectively.
Cluster analysis indicated a low degree of commonality among the differentially regulated genes, with a high proportion of genes specifically expressed under one or two conditions (see Fig. S1G in the supplemental material).
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The "accessory transcriptional glycobiome" were regions expressed under only one carbon substrates.
On the other hand, 167 regions (142 overlapping with CDS and 25 within intergenic regions) with a total of merely 14,338 bp (only 0.34% of the genome) were expressed under only one substrate (129 regions were found to be cellulose-specific, among which 18 were intergenic).
In total, 29,395 wheat genes were differentially expressed under at least one stress condition.
In total, 25,570 genes were expressed under at least one of the time/treatment combinations.
A total of 1408 (56.8%) TFs were found to be differentially expressed under at least one stress condition analyzed.
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