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A primary reason for choosing these three proteins was to analyse the difference in the transcriptomic profile when two soluble proteins were expressed under different expression systems and also to see the variability in the cellular response when expression is in the form of inclusion bodies (rhIFN-β) or as a soluble protein (xylanase).
Subtractive suppression hybridization (SSH) is a powerful tool for gene expression profiling that effectively identifies genes differentially expressed under different conditions or in different tissues [ 9].
In H. marinus, where the two Form I RubisCO gene sets are expressed under different environmental conditions [18], only the expression of the cbbL and cbbS copy in the cso operon correlates with carboxysome formation [18].
For the same reason, two sets of thoughts that are structurally similar in the sense that they can be expressed, under different interpretations, by the same set of sentences, can differ with respect to Frege-consistency.
Regulatory rewiring was revealed by the variability of genes' expression: pathway genes and transcription factors (TFs) were significantly differentially expressed under different conditions (such as terpenoids biosynthetic genes in tissue experiments and E2F/DP family members in genotype experiments).
Gene expression profiles were analyzed statistically to determine if the Unigenes were differentially expressed under different post-harvest conditions using the Winflat program that submits the sequence data to a rigorous statistical analysis described by Audic and Claverie [ 32].
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A set of 16 genes was found to be co-expressed under different heat stress conditions using EDISA [42] (see see Figure 7 (d)).
To identify clusters of genes that are co-expressed under different post-harvest conditions, a k-means analysis was performed to identify groups of genes with similar expression profiles.
Besides, advanced analysis such as pathways enrichment or how genes express under different conditions is not rendered.
Moreover, advanced analysis such as pathways enrichment or how genes express under different conditions is not rendered.
In other fungi, there is also evidence that CP genes, similar to epl1, are expressed during hyphal growth, e.g. in B. cinerea, bcspl1 was found to be expressed under many different growth conditions, whereas no expression was found for bcspl2, a second CP gene (Frías et al. 2011).
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